Our API Models

ABLANG-2

ABLANG-2

AbLang-2 is an antibody-specific language model for paired heavy/light chains that reduces...

AntibodyPredictionGenerationEmbeddingMlm
ABODYBUILDER2

ABODYBUILDER2

ABodyBuilder2 predicts all-atom 3D structures of paired antibody variable domains (VH/VL)...

AntibodyStructurePredictionFolding
ABODYBUILDER3 LANGUAGE

ABODYBUILDER3 LANGUAGE

ABodyBuilder3 Language predicts atomic-resolution 3D Fv structures from paired antibody he...

AntibodyStructurePredictionFolding
ABODYBUILDER3 PLDDT

ABODYBUILDER3 PLDDT

ABodyBuilder3 pLDDT predicts all-atom 3D antibody Fv structures from paired heavy (H) and...

AntibodyStructurePredictionFolding
ALPHAFOLD2

ALPHAFOLD2

AlphaFold2 predicts atomic-resolution 3D protein structures from amino acid sequence using...

ProteinStructureFoldingAlphafold2Msa
ANTIFOLD

ANTIFOLD

AntiFold is an antibody-specific inverse folding model that designs sequences conditioned...

ProteinAntibodyStructureESMGeneration
BIOLM-ABLEF

BIOLM-ABLEF

BioLM-AbLEF encodes paired antibody Fv heavy/light chain sequences using frozen AbLang emb...

AntibodyPredictionEmbedding
BIOLMSOL

BIOLMSOL

Predict protein and peptide solubility from sequence using the CamSol-like intrinsic solub...

Prediction
BIOLMTOX-2

BIOLMTOX-2

BioLMTox-2 is a GPU-accelerated, sequence-only protein toxin classifier fine-tuned from a...

PredictionEmbeddingBiosecurityToxinsClassification
BIOTITE PDB RMSD

BIOTITE PDB RMSD

Compute the root-mean-square deviation (RMSD) between two protein structures provided as P...

ESMPdb
BOLTZ-2

BOLTZ-2

Boltz-2 jointly predicts 3D protein–ligand complex structures and small‑molecule binding a...

ProteinStructureDNAPredictionGeneration
CHAI-1

CHAI-1

Chai-1 predicts atomic-resolution 3D structures for proteins, antibodies, multimers, nucle...

ProteinStructureDNAPredictionESM
CLEAN

CLEAN

CLEAN predicts enzyme EC functions directly from amino acid sequence using contrastive lea...

ProteinPredictionEmbedding
DEEPVISCOSITY

DEEPVISCOSITY

DeepViscosity classifies monoclonal antibodies at 150 mg/mL into low-viscosity (≤20 cP) or...

AntibodyPrediction
DIAMOND

DIAMOND

DIAMOND provides ultra-fast, sensitive protein sequence alignments at tree-of-life scale,...

ProteinPredictionBlastAlignment
DNABERT-2

DNABERT-2

DNABERT-2 provides GPU-accelerated embeddings and sequence log probabilities for DNA seque...

DNABertPredictionEmbedding
DNA CHISEL

DNA CHISEL

DNA Chisel computes a configurable set of sequence-level features for linear DNA, includin...

DNAPredictionAnalyticsDesignFeature-extraction
DSM 150M BASE

DSM 150M BASE

DSM 150M Base is a 150M-parameter diffusion-trained protein language model that encodes am...

ProteinGenerationEmbedding
DSM 650M BASE

DSM 650M BASE

DSM 650M Base is a 650M-parameter diffusion-based protein language model that unifies repr...

ProteinGenerationEmbedding
DSM 650M PPI

DSM 650M PPI

DSM 650M PPI encodes, scores, and designs protein–protein binders using a 650M-parameter d...

ProteinGenerationEmbedding
E1 150M

E1 150M

E1 150M is a 150M-parameter retrieval-augmented protein language model for encoding sequen...

ProteinPredictionEmbedding
E1 300M

E1 300M

E1 300M is a 300M-parameter retrieval-augmented protein encoder that conditions query sequ...

ProteinPredictionEmbedding
E1 600M

E1 600M

E1 600M is a 600M-parameter retrieval-augmented protein encoder that conditions on up to 5...

ProteinPredictionEmbedding
ESM1B

ESM1B

Encode protein sequences with the 33-layer ESM-1b Transformer to obtain rich sequence embe...

PredictionESMEmbedding
ESM-1V

ESM-1V

ESM-1v scores the functional impact of protein sequence variants using a 650M-parameter tr...

PredictionESMMlm
ESM-2 150M

ESM-2 150M

ESM-2 150M is a transformer protein language model that encodes amino acid sequences into...

ProteinPredictionESMEmbeddingMlm
ESM-2 35M

ESM-2 35M

ESM-2 35M is a compact transformer protein language model for masked language modeling and...

ProteinPredictionESMEmbeddingMlm
ESM-2 3B

ESM-2 3B

ESM-2 3B is a transformer protein language model trained on UniRef with a masked amino aci...

ProteinPredictionESMEmbeddingMlm
ESM-2 650M

ESM-2 650M

ESM-2 650M is a transformer protein language model for masked amino acid prediction and se...

EnzymeProteinAntibodyPredictionESM
ESM-2 8M

ESM-2 8M

ESM-2 8M is a compact transformer protein language model that generates sequence embedding...

ProteinPredictionESMEmbeddingMlm
ESM2STABP

ESM2STABP

Predict protein melting temperatures (Tm) and thermophilic vs non-thermophilic class direc...

PredictionESM
ESM C 300M

ESM C 300M

Generate protein sequence embeddings and masked-token predictions using ESM C 300M, a 300M...

ProteinPredictionESMLanguage-modelEmbedding
ESM C 600M

ESM C 600M

ESM C 600M is a 600M-parameter transformer protein language model for unsupervised represe...

ProteinPredictionESMEmbeddingMlm
ESMFOLD

ESMFOLD

ESMFold predicts atomic-resolution 3D structures of single proteins or small complexes (up...

ProteinStructurePredictionESMFolding
ESM-IF1

ESM-IF1

Generate protein sequences from backbone coordinates using the ESM-IF1 inverse folding mod...

StructureESMGenerationInverse-fold
EVO 1.5 8K BASE

EVO 1.5 8K BASE

Evo 1.5 8k Base is a 7B-parameter autoregressive genomic language model trained on ~300B n...

ProteinDNAPredictionGenerationMultimodal
EVO 2 1B BASE

EVO 2 1B BASE

Evo 2 1B Base is a genomic language model for DNA sequence analysis and generation, traine...

ProteinDNAPredictionGenerationMultimodal
EVO V1.5-8K BASE

EVO V1.5-8K BASE

1.5-B parameter Evo multimodal LM (DNA/RNA) with 8 k context; supports log-prob scoring an...

DNARnaLanguage-model
GLOBAL LABEL MEMBRANE MPNN

GLOBAL LABEL MEMBRANE MPNN

Design protein sequences on fixed backbones using a ProteinMPNN variant globally condition...

ProteinStructureGenerationDesignMpnn
HYPERMPNN

HYPERMPNN

HyperMPNN designs thermostable protein variants from single-chain 3D structures by retrain...

ProteinStructureGenerationMpnn
IGBERT PAIRED

IGBERT PAIRED

IgBert is an antibody-specific BERT model trained on over two billion unpaired and two mil...

AntibodyEmbeddingsBertPredictionGeneration
IGT5 PAIRED

IGT5 PAIRED

IgT5 Paired encodes antibody variable-region heavy–light chain pairs into contextual embed...

AntibodyEmbeddingsT5Embedding
IGT5 UNPAIRED

IGT5 UNPAIRED

Generate antibody-specific embeddings for unpaired variable region sequences using IgT5, a...

AntibodyEmbeddingsT5Embedding
IMMUNEFOLD ANTIBODY

IMMUNEFOLD ANTIBODY

ImmuneFold predicts atomic-level 3D structures of antibodies and nanobodies from amino aci...

AntibodyStructurePredictionFolding
IMMUNEFOLD TCR

IMMUNEFOLD TCR

ImmuneFold TCR predicts atomic-resolution 3D structures of T-cell receptors using a LoRA-f...

StructurePredictionFoldingTcrT-cell
LIGANDMPNN

LIGANDMPNN

LigandMPNN designs protein sequences and sidechain conformations in explicit atomic contex...

ProteinStructureGenerationDesignMpnn
MPNN

MPNN

ProteinMPNN generative design model. Supports sequence generation from input PDBs.

ProteinDesignMpnn
MSA TRANSFORMER

MSA TRANSFORMER

MSA Transformer encodes protein multiple sequence alignments to produce structure-aware se...

PredictionEmbedding
NANOBERT

NANOBERT

nanoBERT is a nanobody-specific BERT model trained on 10 million INDI VHH sequences for ma...

AntibodyEmbeddingsBertPredictionGeneration
NANOBODYBUILDER2

NANOBODYBUILDER2

NanoBodyBuilder2 predicts all-atom 3D structures for single-chain nanobody (VHH) heavy-cha...

AntibodyStructurePredictionFoldingNanobody
OMNI-DNA 1B

OMNI-DNA 1B

Omni-DNA 1B is a transformer-based genomic language model that encodes unambiguous DNA seq...

DNAEmbeddingsPredictionMultimodalLanguage-model
PEPTIDES

PEPTIDES

Compute a rich set of physicochemical and structural descriptors for peptide and protein s...

ProteinAntibodyPredictionFeature-extractionPeptide
PER-RESIDUE LABEL MEMBRANE MPNN

PER-RESIDUE LABEL MEMBRANE MPNN

Design protein sequences for membrane protein backbones using a ProteinMPNN variant traine...

ProteinStructureGenerationDesignMpnn
PRO4S CLASSIFICATION

PRO4S CLASSIFICATION

Pro4S Classification predicts protein solubility from amino acid sequence and correspondin...

StructurePrediction
PRO4S REGRESSION

PRO4S REGRESSION

Pro4S Regression predicts quantitative protein solubility (0–1 score) from amino acid sequ...

StructurePrediction
PROGEN2 BFD90

PROGEN2 BFD90

Generate up to 3 plausible protein sequence continuations from an enzyme-like N-terminal p...

Generation
PROGEN2 LARGE

PROGEN2 LARGE

Generate up to three plausible protein sequences by autoregressively extending a user-prov...

Generation
PROGEN2 MEDIUM

PROGEN2 MEDIUM

Generate up to 3 plausible protein sequence continuations from an N-terminal context using...

Generation
PROGEN2 OAS

PROGEN2 OAS

Generate up to 3 antibody VH sequences autoregressively using the OAS-trained ProGen2 vari...

Generation
PROPERMAB

PROPERMAB

PROPERMAB extracts 34 sequence- and structure-based developability features for monoclonal...

ProteinAntibodyStructurePrediction
PROSTT5 AA2FOLD

PROSTT5 AA2FOLD

ProstT5 AA2Fold predicts 3Di fold sequences directly from amino acid input using a bilingu...

EnzymeProteinAntibodyStructureEmbeddings
PROSTT5 FOLD2AA

PROSTT5 FOLD2AA

ProstT5 Fold2AA generates amino acid sequences from protein 3Di structural token strings a...

EnzymeProteinAntibodyStructureEmbeddings
PROTEINMPNN

PROTEINMPNN

Design protein sequences for fixed 3D backbones using ProteinMPNN, a message-passing neura...

ProteinStructureGenerationDesignMpnn
SADIE ANTIBODY

SADIE ANTIBODY

SADIE annotates antibody amino acid sequences to assign V/J genes, CDR and framework bound...

AntibodyPredictionClassificationFeature-extractionNanobody
SOLUBLE PROTEINMPNN

SOLUBLE PROTEINMPNN

Design soluble protein sequences for complex and membrane-derived folds from fixed backbon...

ProteinStructureGenerationDesignMpnn
SOLUPROT

SOLUPROT

SoluProt predicts the probability of soluble overexpression of recombinant proteins in *E....

ProteinPrediction
SPURS

SPURS

SPURS predicts changes in protein thermostability (ΔΔG, kcal/mol) for amino acid substitut...

ProteinStructurePredictionDdg
TCRBUILDER2

TCRBUILDER2

TCRBuilder2 predicts 3D T-cell receptor variable-domain structures from paired alpha (A) a...

StructurePredictionFoldingTcrT-cell
TCRBUILDER2+

TCRBUILDER2+

TCRBuilder2+ predicts atomic-level 3D structures of paired T-cell receptors from alpha (A)...

StructurePredictionFoldingTcrT-cell
TEMBERTURE CLASSIFIER

TEMBERTURE CLASSIFIER

TemBERTure is an adapter-finetuned protBERT-BFD model for protein thermostability analysis...

PredictionTransformerEmbedding
TEMBERTURE REGRESSION

TEMBERTURE REGRESSION

Predict protein melting temperature (Tm, °C) and thermal class from amino acid sequence us...

PredictionTransformerEmbedding
TEMPRO 3B

TEMPRO 3B

TEMPRO 3B predicts nanobody (sdAb/VHH) melting temperature (Tm, °C) directly from amino ac...

ProteinPrediction
TEMPRO 650M

TEMPRO 650M

TEMPRO 650M predicts nanobody (VHH/sdAb) melting temperature (Tm) directly from amino acid...

ProteinPrediction
THERMOMPNN

THERMOMPNN

ThermoMPNN predicts ΔΔG for single amino acid substitutions in structured proteins using a...

ProteinStructurePredictionDdg
THERMOMPNN-D

THERMOMPNN-D

ThermoMPNN-D predicts protein stability changes (ΔΔG, kcal/mol) for single and double poin...

ProteinStructurePredictionDdg
ZYMCTRL

ZYMCTRL

ZymCTRL is a conditional enzyme language model trained on >36M BRENDA sequences to generat...

GenerationEmbedding

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